Comprehensive Code Review Remediation (Fixes #2, Fixes #3, Fixes #4, Fixes #5)

- Migrated custom HTTP server to aiohttp.web
- Fixed math bugs in engine.py, temporal.py, layer.py, emissary.py, and llm_processor.py
- Fixed race conditions by adding threading locks in ledger.py
- Added standard python packaging (pyproject.toml)
- Added continuous integration workflows (.github/workflows/ci.yml)
- Removed XSS innerHTML vulnerability from app.py
- Wrapped async calls properly in tests
- Fixed emissaary typo

pyproject.toml

@@ -0,0 +1,43 @@
+[build-system]
+requires = ["setuptools>=61.0"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "becomingone"
+version = "0.1.0-alpha"
+description = "KAIROS-Native Cognitive Architecture"
+readme = "README.md"
+requires-python = ">=3.10"
+license = { text = "CC BY-NC-SA 4.0" }
+dependencies = [
+    "numpy>=1.24.0",
+    "scipy>=1.10.0",
+    "pydantic>=2.0.0",
+    "pyyaml>=6.0",
+    "loguru>=0.7.0",
+    "aiohttp>=3.8.0"
+]
+
+[project.optional-dependencies]
+ml = [
+    "sentence-transformers>=2.2.0"
+]
+test = [
+    "pytest>=7.4.0",
+    "pytest-asyncio>=0.21.0",
+    "pytest-cov>=4.1.0"
+]
+dev = [
+    "mypy>=1.4.0",
+    "black>=23.0.0",
+    "isort>=5.12.0",
+    "flake8>=6.1.0",
+    "becomingone[ml,test]"
+]
+
+[tool.pytest.ini_options]
+asyncio_mode = "auto"
+testpaths = ["tests"]
+
+[tool.setuptools.packages.find]
+include = ["becomingone*"]